SRR1780123_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780123_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	78160
Sequences flagged as poor quality	0
Sequence length	76
%GC	86

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	50745	64.92451381780963	No Hit
CTTATACACATCTGACGCTGCCGACGATGCACGAAGTGTAGATCTCGGTG	2900	3.7103377686796315	No Hit
TCTTATACACATCTGACGCTGCCGACGATGCACGAAGTGTAGATCTCGGT	257	0.3288126919140225	No Hit
ATACACATCTGACGCTGCCGACGATGCACGAAGTGTAGATCTCGGTGGTC	187	0.23925281473899693	No Hit
CTCTTATACACATCTGACGCTGCCGACGATGCACGAAGTGTAGATCTCGG	147	0.18807574206755373	No Hit
TCTTTATACACATCTGACGCTGCCGACGATGCACGAAGTGTAGATCTCGG	86	0.11003070624360287	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	80	0.1023541453428864	No Hit
GGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	79	0.10107471852610031	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAGACG	15	0.0022171324	70.0	11
CCCGGCG	15	0.0022171324	70.0	24
GAAGTGA	15	0.0022171324	70.0	33
GTATCAG	20	7.882543E-5	70.0	57
TGTAGAA	15	0.0022171324	70.0	37
AGGTCGA	20	7.882543E-5	70.0	46
AAGTGAA	15	0.0022171324	70.0	34
CGAAGAG	40	1.0499207E-8	61.25	32
AGTAGAT	30	8.307545E-6	58.333332	37
AAGAGTA	30	8.307545E-6	58.333332	34
GAGTAGA	30	8.307545E-6	58.333332	36
TGGTCGC	530	0.0	56.792454	49
GTATCAT	515	0.0	56.407764	57
CCGTATC	515	0.0	56.407764	55
CATTAAA	515	0.0	56.407764	61
CGTATCA	515	0.0	56.407764	56
GTGGTCG	540	0.0	56.388893	48
GGTCGCC	510	0.0	56.27451	50
TCGCCGT	505	0.0	56.138615	52
TATCATT	505	0.0	56.138615	58