SRR1780113_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780113_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	281024
Sequences flagged as poor quality	0
Sequence length	76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	64493	22.949285470280117	No Hit
CTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTG	20726	7.3751708039171024	No Hit
TCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	1852	0.6590184468230471	No Hit
ATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGGTC	1352	0.481097699840583	No Hit
CTCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	1332	0.4739808699612844	No Hit
TCTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	721	0.2565617171487133	No Hit
CTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	298	0.10604076520154863	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATAGGT	15	0.0022223212	70.006584	57
GCGTGTC	15	0.0022223212	70.006584	57
ATCCTTG	20	7.9215024E-5	69.99413	45
AAAAAGG	2090	0.0	55.93828	70
GCCGTAT	3005	0.0	53.45641	54
TCGCCGT	3015	0.0	53.04696	52
CGCCGTA	3040	0.0	52.95609	53
GTCGCCG	3030	0.0	52.784348	51
GATCTCG	3025	0.0	52.755905	41
CGTATCA	3050	0.0	52.67709	56
CTCGGTG	3040	0.0	52.61072	44
ATCTCGG	3035	0.0	52.582077	42
TCGGTGG	3055	0.0	52.581516	45
TGGTCGC	3050	0.0	52.55297	49
TGCGGGC	20	0.0069440147	52.50494	19
CCCCGTA	20	0.0069440147	52.50494	37
CCCGTAA	20	0.0069440147	52.50494	38
CCCCCGT	20	0.0069440147	52.50494	36
CTATGTT	20	0.006948904	52.495598	52
ACGCCGT	20	0.006948904	52.495598	52