SRR1780110_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780110_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	292924
Sequences flagged as poor quality	0
Sequence length	76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	57757	19.717401100626784	No Hit
CTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTG	21562	7.360953694473651	No Hit
TCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	1886	0.6438530130682362	No Hit
CTCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	1346	0.45950485450150896	No Hit
ATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGGTC	1305	0.44550804986959075	No Hit
TCTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	646	0.2205350193224181	No Hit
CTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	320	0.10924335322472724	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGGCG	15	0.0022230942	70.0012	2
CGACCTA	15	0.0022246002	69.98924	14
ATCGAGC	15	0.0022246002	69.98924	35
AAAAAGG	2220	0.0	55.33878	70
AACGTTT	20	0.0069417316	52.50986	57
ACGTTTG	20	0.0069417316	52.50986	58
AAACGTT	20	0.0069417316	52.50986	56
CAACGAA	20	0.006946421	52.500896	20
TGCGGGC	20	0.006946421	52.500896	19
CGAGCCT	20	0.0069511137	52.491936	8
TCTCGGT	3340	0.0	52.396107	43
CTCGGTG	3350	0.0	52.33524	44
TCGCCGT	3290	0.0	52.226017	52
CGGTGGT	3360	0.0	52.179485	46
TGGTCGC	3335	0.0	52.15091	49
GCCGTAT	3305	0.0	52.103767	54
AGATCTC	3380	0.0	52.08669	40
TCGGTGG	3380	0.0	52.077797	45
GTCGCCG	3320	0.0	52.070312	51
ATCTCGG	3375	0.0	52.060146	42