SRR1780109_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780109_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	137733
Sequences flagged as poor quality	0
Sequence length	76
%GC	72

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	61742	44.827310811497604	No Hit
CTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTG	20377	14.794566298563161	No Hit
TCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	1838	1.334465959501354	No Hit
ATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGGTC	1330	0.965636412479217	No Hit
CTCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	1272	0.9235259523861384	No Hit
TCTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	566	0.4109400071152157	No Hit
CTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	270	0.19603145215743503	No Hit
CTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	223	0.16190745863373338	No Hit
CTTTACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	211	0.1531949496489585	No Hit
CTTATACACATCTGACGCTGCCGACGAATGATGGAGTGTAGATCTCGGTG	210	0.1524689072335606	No Hit
TCTTAATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	167	0.12124908337145054	No Hit
CTTAATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	155	0.11253657438667568	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAAAC	15	0.0022207364	70.00001	51
CGCTCTT	15	0.0022207364	70.00001	17
ACCTACC	15	0.0022207364	70.00001	68
TAGGAGC	15	0.0022207364	70.00001	4
AAGGGGG	145	0.0	62.75862	70
TCTTTAT	90	0.0	62.222218	1
AAAAAGG	1895	0.0	57.071236	70
TGTGGCG	25	2.383628E-4	55.999996	11
TAACCTA	25	2.383628E-4	55.999996	6
CTATACA	45	2.6802809E-8	54.444443	1
AGATCTC	2985	0.0	52.881073	40
GATCTCG	2990	0.0	52.79264	41
TCTCGGT	3000	0.0	52.733334	43
ATCTCGG	2995	0.0	52.70451	42
GTATCAT	2995	0.0	52.58765	57
TAGATCT	2995	0.0	52.58765	39
GTCGCCG	3010	0.0	52.558136	51
CGTATCA	3005	0.0	52.529118	56
GCGAAGT	20	0.0069391155	52.5	38
ACCGCAA	20	0.0069391155	52.5	8