SRR1780106_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780106_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	196752
Sequences flagged as poor quality	0
Sequence length	76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	55919	28.421057981621534	No Hit
CTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTG	16830	8.55391558916809	No Hit
TCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	1491	0.7578067821419858	No Hit
CTCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	1131	0.5748353256891925	No Hit
ATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGGTC	1096	0.5570464340896153	No Hit
TCTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	574	0.29173782223306494	No Hit
CTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	258	0.13112954379116856	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGAGG	15	0.0022226048	69.996445	3
CATCGCC	15	0.0022226048	69.996445	37
AAAAAGG	1850	0.0	55.807972	70
CCGATGT	20	0.0069379364	52.510674	15
TCGATTG	20	0.0069449157	52.49733	69
GCACAGT	20	0.0069449157	52.49733	32
ACTCGAT	20	0.0069449157	52.49733	67
CATGTAG	20	0.0069449157	52.49733	2
CACGTCT	20	0.0069449157	52.49733	7
ACAAGTT	20	0.0069449157	52.49733	39
TCGCCGT	2560	0.0	52.100433	52
GTCGCCG	2570	0.0	52.033924	51
AGATCTC	2550	0.0	51.879715	40
TGGTCGC	2580	0.0	51.832245	49
GCCGTAT	2560	0.0	51.81377	54
TCTCGGT	2555	0.0	51.77819	43
TAGATCT	2570	0.0	51.748344	39
CTCGGTG	2560	0.0	51.67706	44
CGCCGTA	2570	0.0	51.625282	53
TCGGTGG	2570	0.0	51.612164	45