SRR1780105_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780105_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	233274
Sequences flagged as poor quality	0
Sequence length	76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	52554	22.52887162735667	No Hit
CTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTG	17287	7.410598695096753	No Hit
TCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	1527	0.654595025592222	No Hit
CTCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	1231	0.527705616571071	No Hit
ATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGGTC	1139	0.4882670164699023	No Hit
TCTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	582	0.2494920136834795	No Hit
CTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	266	0.11402899594468309	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGTGCC	15	0.0022177652	70.03903	32
GGTACAA	15	0.002223432	69.993996	2
TAAGCCG	15	0.002223432	69.993996	5
GCTCTAG	25	2.388086E-4	55.995197	1
AAAAAGG	1780	0.0	55.653225	70
GATCTCG	2635	0.0	53.259193	41
GCCGTAT	2610	0.0	53.098896	54
TCGCCGT	2625	0.0	53.06212	52
ATCTCGG	2645	0.0	53.057835	42
CTCGGTG	2645	0.0	53.057835	44
CGGTGGT	2645	0.0	53.057835	46
TGGTCGC	2645	0.0	53.057835	49
AGATCTC	2650	0.0	52.95772	40
CGTATCA	2625	0.0	52.9288	56
GTATCAT	2645	0.0	52.793205	57
TAGATCT	2645	0.0	52.793205	39
TCGGTGG	2665	0.0	52.790974	45
GTAGATC	2655	0.0	52.726177	38
CCGTATC	2630	0.0	52.6951	55
GTCGCCG	2650	0.0	52.693596	51