SRR1780103_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780103_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	266577
Sequences flagged as poor quality	0
Sequence length	76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	71231	26.720609805046948	No Hit
CTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTG	25994	9.751028783428428	No Hit
TCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	2414	0.9055544926981698	No Hit
ATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGGTC	1723	0.6463423326093399	No Hit
CTCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	1631	0.6118307280823178	No Hit
TCTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	798	0.29935065665830135	No Hit
CTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	370	0.1387966703804154	No Hit
CTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	284	0.10653582267037291	No Hit
CTTTACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	270	0.10128405676408693	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTTC	15	0.0022230244	70.00001	60
CGACGTA	15	0.0022230244	70.00001	53
CCGAGTT	15	0.0022230244	70.00001	59
TAGTCGA	15	0.0022230244	70.00001	2
GATCCTA	35	2.9672447E-7	60.0	1
AAAAAGG	2440	0.0	56.22951	70
CCGAATC	25	2.3876948E-4	56.000004	55
AAGTATC	20	0.00694621	52.5	8
TCGTTGT	20	0.00694621	52.5	34
GACGTAT	20	0.00694621	52.5	54
TAACGGC	20	0.00694621	52.5	23
GGCGGTA	20	0.00694621	52.5	41
CATGTTC	20	0.00694621	52.5	34
TCGACGT	20	0.00694621	52.5	52
TGGTCGA	20	0.00694621	52.5	49
ATCTCGG	3780	0.0	50.74074	42
GATCTCG	3780	0.0	50.74074	41
CTCGGTG	3790	0.0	50.699207	44
TCTCGGT	3800	0.0	50.657898	43
TCGGTGG	3810	0.0	50.6168	45