SRR1780098_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780098_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	200326
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCCGT	19749	9.858430757864681	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCCG	3968	1.9807713427113804	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCC	1536	0.7667501971785988	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTAGTATGCCGT	1455	0.7263161047492587	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1073	0.5356269281071853	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGACGT	918	0.458253047532522	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTAAGCCGT	715	0.3569182232960275	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCC	621	0.30999470862494133	No Hit
ATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCCGTCTT	595	0.2970158641414494	RNA PCR Primer, Index 26 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTAGTATGCCG	363	0.18120463644259857	No Hit
ATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCCGTCAT	320	0.15973962441220813	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCCGA	306	0.152751015844174	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCCCT	276	0.1377754260555295	No Hit
CTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCCGTC	271	0.13527949442408874	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATTCCGT	267	0.13328274911893612	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTTCGAGTATCTCGTATGCCGT	262	0.13078681748749538	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAGA	20	7.9052596E-5	70.01324	28
ACGCCTT	15	0.00222055	70.01323	30
GACGTAC	15	0.00222055	70.01323	26
ACGTACG	15	0.00222055	70.01323	27
ACGAGTA	25	2.8292507E-6	70.01323	31
TGCGTGG	15	0.00222055	70.01323	29
TGACGAA	15	0.0022227506	69.99575	45
AGGGGGG	2330	0.0	61.434044	70
ATCGTAT	40	1.0617441E-8	61.246284	39
TAAGCCG	135	0.0	59.62602	43
GCCGTAA	150	0.0	58.3298	46
CGAAATA	25	2.386972E-4	55.996605	48
ATATCGT	50	9.767973E-10	55.996605	37
AACTCGT	25	2.386972E-4	55.996605	37
TATCGTA	50	9.767973E-10	55.996605	38
TGCCGAC	50	9.767973E-10	55.996605	45
AGCCGTC	120	0.0	55.413303	45
TTCGAGA	90	0.0	54.454735	30
TAAGACG	45	2.6899215E-8	54.441143	43
CGAGAAT	65	3.6379788E-12	53.85633	32