SRR1780097_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780097_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54431
Sequences flagged as poor quality	0
Sequence length	76
%GC	93

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	41667	76.5501276845915	No Hit
CTTATACACATCTGACGCTGCCGACGACGATACACGTGTAGATCTCGGTG	530	0.9737098344693282	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	113	0.20760228546232842	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	86	0.1579981995554004	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	64	0.11758005548308868	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	59	0.10839411364847239	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGG	56	0.1028825485477026	No Hit
GGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	55	0.10104536018077934	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	55	0.10104536018077934	No Hit
GGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	55	0.10104536018077934	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGTGT	15	0.0022070368	70.05152	33
TGGGCGC	15	0.0022151112	69.98714	3
GGGTGTA	15	0.0022151112	69.98714	34
GGTGTAG	15	0.0022151112	69.98714	35
CTATTAG	15	0.0022151112	69.98714	7
ACACGTC	35	2.9269177E-7	59.98897	6
CACGTCT	30	8.282739E-6	58.322613	7
GGCGCTG	60	8.0035534E-11	52.53864	14
TGGCGCT	55	2.222805E-9	50.899734	13
GCGCTGC	35	2.052136E-5	50.0368	15
CTGCCGG	35	2.052136E-5	50.0368	18
ACGTCTG	35	2.0633533E-5	49.99081	8
GTATCAT	95	0.0	47.88593	57
CATTAAA	95	0.0	47.88593	61
TATCATT	95	0.0	47.88593	58
ATCATTA	95	0.0	47.88593	59
TCATTAA	95	0.0	47.88593	60
GCGCTGG	30	5.808728E-4	46.70101	15
CTGGCGC	60	4.800313E-9	46.658092	12
GTCTGGC	45	1.6582435E-6	46.65809	10