SRR1780088_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780088_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	230864
Sequences flagged as poor quality	0
Sequence length	76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	62254	26.965659435858342	No Hit
CTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTG	18579	8.047595120937002	No Hit
TCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGT	1878	0.8134659366553468	No Hit
CTCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	1414	0.6124818074710653	No Hit
TCTTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	555	0.24040127520964724	No Hit
ATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTGGTC	421	0.18235844479866933	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	232	0.10049206459214083	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCGCGG	15	0.002222647	70.0	5
ATCCCAC	15	0.002222647	70.0	52
GGGCGCT	40	1.0621079E-8	61.25	13
GTCGGGC	25	2.3870228E-4	55.999996	10
TGCCGGC	50	9.767973E-10	55.999996	19
ACGACAT	45	2.691013E-8	54.444443	24
TCGCCGT	2685	0.0	53.054005	52
GCCGTAT	2675	0.0	52.990654	54
GTAGATC	2700	0.0	52.75926	38
ATCTCGG	2695	0.0	52.727276	42
GTCGCCG	2715	0.0	52.725597	51
TCTCGGT	2685	0.0	52.66294	43
GATCTCG	2700	0.0	52.629627	41
AGATCTC	2695	0.0	52.597404	40
GGTGTCG	20	0.0069450364	52.5	41
GTCGACG	20	0.0069450364	52.5	51
GTCTGAC	20	0.0069450364	52.5	10
CGACGTA	20	0.0069450364	52.5	53
TATGCGC	20	0.0069450364	52.5	3
TGACGAC	40	7.458075E-7	52.5	19