SRR1780086_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780086_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	177215
Sequences flagged as poor quality	0
Sequence length	76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	48715	27.489208024151456	No Hit
CTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTG	18614	10.503625539598792	No Hit
TCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGT	1653	0.9327652851056627	No Hit
CTCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	1356	0.7651722483988376	No Hit
ATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTGGTC	1201	0.6777078689727167	No Hit
TCTTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	586	0.3306717828626245	No Hit
CTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTGG	236	0.13317157125525492	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAC	15	0.0022220402	69.998024	50
GGATCTT	15	0.0022220402	69.998024	18
TAGCCCG	15	0.0022220402	69.998024	10
GGCGCGT	20	7.911259E-5	69.998024	5
AATAGAC	15	0.0022220402	69.998024	7
GCTTTAG	15	0.0022220402	69.998024	1
AGCCGAC	45	2.6868292E-8	54.44291	19
CGTATCA	2795	0.0	54.095074	56
GCCGTAT	2785	0.0	53.786636	54
CGCCGTA	2800	0.0	53.74849	53
GTATCAT	2775	0.0	53.728214	57
TCGCCGT	2795	0.0	53.719414	52
TGGTCGC	2815	0.0	53.33775	49
CGGTGGT	2830	0.0	53.302383	46
GATCTCG	2845	0.0	53.26739	41
CCGTATC	2820	0.0	53.24318	55
GTAGATC	2860	0.0	53.23276	38
GGTGGTC	2860	0.0	53.23276	47
GTCGCCG	2830	0.0	53.17871	51
CTCGGTG	2830	0.0	53.17871	44