SRR1780081_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780081_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	221696
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	25121	11.331282476905312	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCCGT	21522	9.707888279445728	No Hit
ATTATACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCCGT	10146	4.5765372401847575	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCCG	3749	1.6910544168591224	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCCGT	2930	1.3216296189376444	No Hit
ATTAAACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCCGT	1942	0.8759743071593533	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCC	1223	0.5516563221709007	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCC	525	0.23681076789838335	No Hit
ATACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCCGTCTT	473	0.21335522517321018	RNA PCR Primer, Index 30 (95% over 21bp)
ATCTTATACACATCTCCGAGCCCACGAGACGCCTCTGGATCTCGTATGCC	386	0.17411229792147806	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTCAC	15	0.0022225291	70.00001	53
CCGAATG	15	0.0022225291	70.00001	15
CGCACTA	15	0.0022225291	70.00001	29
CGACTTA	15	0.0022225291	70.00001	48
ACGATTC	20	7.914529E-5	70.0	24
ATTATAC	1170	0.0	65.21368	1
AGGGGGG	4145	0.0	64.680336	70
CCGACTT	35	2.9649527E-7	60.0	47
CGACTCT	60	1.8189894E-12	58.333336	28
TAAACAC	710	0.0	57.1831	3
TGACGTC	80	0.0	56.875	45
CGTCTTC	4850	0.0	56.79381	48
CTCGTAT	4820	0.0	56.784233	39
CCGTCTT	4780	0.0	56.746864	47
TCTCGTA	4815	0.0	56.697823	38
ATCTCGT	4810	0.0	56.68399	37
GTATGCC	4820	0.0	56.639008	42
TCGTATG	4915	0.0	56.61241	40
CGTATGC	4855	0.0	56.591145	41
TATGCCG	4820	0.0	56.56639	43