SRR1780079_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780079_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	493348
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	28772	5.831988778711985	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTAAACTTATCTCGTATGCCGT	26432	5.357678555502404	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTAAACTTATCTCGTATGCCGT	8638	1.7508938923437412	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTTAAACTTATCTCGTATGCCGT	4411	0.8940950404177174	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTAAACTTATCTCGTATGCCG	4264	0.8642986289596797	No Hit
ATTAAACACATCTCCGAGCCCACGAGACTTAAACTTATCTCGTATGCCGT	2029	0.4112715567915548	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTAAACTTATCTCGTATGCC	1423	0.2884373707808687	No Hit
ATACACATCTCCGAGCCCACGAGACTTAAACTTATCTCGTATGCCGTCTT	816	0.1654004880935972	Illumina PCR Primer Index 10 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTAAACTTATCTCGTATGCC	599	0.12141530927458914	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	5175	62.692295	70
ATTATAC	1310	55.575172	1
AAGGGGG	5845	55.20662	69
CGTATGC	5905	55.179096	41
TATGCCG	5850	55.099613	43
TCGTATG	6005	55.07615	40
CGTCTTC	5800	55.031532	48
CTCGTAT	5930	55.00548	39
ATGCCGT	5840	54.95425	44
GCCGTCT	5785	54.93223	46
TCTCGTA	5950	54.879417	38
TGCCGTC	5850	54.86031	45
ATCTCGT	5955	54.833332	37
CCGTCTT	5770	54.83242	47
CTTGAAA	5885	54.652973	57
GTATGCC	5940	54.26477	42
TCTTCTG	5930	54.061184	50
TATCTCG	6000	54.01377	36
CTGCTTG	5920	53.97515	54
GTCTTCT	5935	53.95667	49