SRR1780074_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780074_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	192351
Sequences flagged as poor quality	0
Sequence length	76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	42608	22.151171556165554	No Hit
CTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTG	8569	4.454876761753254	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGT	760	0.3951110209980712	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGG	561	0.2916543194472605	No Hit
ATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTGGTC	516	0.26825958794079574	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGG	242	0.12581166721254375	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGTC	15	0.0022220812	70.00001	46
CGCGCGG	15	0.0022220812	70.00001	49
CCTCGCA	15	0.0022220812	70.00001	66
ACGTCAC	15	0.0022220812	70.00001	32
GGCGCGT	15	0.0022220812	70.00001	5
TCGACTT	15	0.0022220812	70.00001	19
GTTGGTG	15	0.0022220812	70.00001	43
TGCCGGC	25	2.3860177E-4	56.000004	19
TGGGCGC	45	2.6877387E-8	54.444443	3
TCGCCGT	1280	0.0	53.867188	52
TCTCGGT	1295	0.0	53.783783	43
ATCTCGG	1290	0.0	53.720932	42
CTCGGTG	1310	0.0	53.70229	44
TCGGTGG	1310	0.0	53.70229	45
GCCGTAT	1285	0.0	53.65759	54
TGGTCGC	1325	0.0	53.622643	49
GATCTCG	1295	0.0	53.51351	41
CGCCGTA	1290	0.0	53.44961	53
GTCGCCG	1310	0.0	53.435112	51
AGATCTC	1305	0.0	53.103447	40