SRR1780073_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780073_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	109280
Sequences flagged as poor quality	0
Sequence length	76
%GC	68

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39960	36.566617862371885	No Hit
CTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTG	7964	7.2877013177159595	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGT	741	0.6780746705710102	No Hit
ATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTGGTC	434	0.39714494875549045	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGG	413	0.3779282576866764	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGG	252	0.23060029282576866	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	122	0.11163982430453881	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGAT	25	2.82381E-6	70.0	22
TACGCGT	15	0.0022195047	70.0	5
CGGATAG	15	0.0022195047	70.0	53
CGCGTGT	15	0.0022195047	70.0	7
CGCGTGG	15	0.0022195047	70.0	7
TGTGGCG	35	2.9509283E-7	60.0	11
GCGCGTG	30	8.3296545E-6	58.333332	6
GGCGCGT	30	8.3296545E-6	58.333332	5
CTATACA	25	2.3814393E-4	55.999996	1
CCAACCG	25	2.3814393E-4	55.999996	8
CTTTATA	45	2.6733687E-8	54.444447	2
TGCCGGC	45	2.6733687E-8	54.444447	19
GACAGGG	20	0.0069352947	52.5	21
TTGTGCG	40	7.421604E-7	52.5	2
GGTCGCA	20	0.0069352947	52.5	52
AGCCCCC	20	0.0069352947	52.5	41
GGACTGG	20	0.0069352947	52.5	1
TGGCGCG	20	0.0069352947	52.5	13
GTCTCGG	20	0.0069352947	52.5	42
AGGAACT	20	0.0069352947	52.5	42