SRR1780065_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780065_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	536020
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	34490	6.434461400694004	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4020	0.7499720159695533	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	3798	0.7085556509085482	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	3720	0.6940039550763031	No Hit
ATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTCTT	948	0.1768590724226708	TruSeq Adapter, Index 9 (95% over 21bp)
CATATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	887	0.16547890004104324	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	670	0.12499533599492556	No Hit
CTAATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	617	0.11510764523711803	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGTA	15	0.002224455	69.99841	67
ATCGGAT	55	0.0	63.634926	32
AGGGGGG	4295	0.0	61.116196	70
CGGATAT	70	0.0	55.003883	34
AACGGTT	20	0.0069480827	52.503708	64
CGACGCA	20	0.0069506466	52.49881	60
ATCGTAA	20	0.0069506466	52.49881	6
CGACTTA	20	0.0069532115	52.49391	11
CCGTCTT	4850	0.0	52.313522	47
AAGGGGG	5005	0.0	52.306507	69
CGTCTTC	4950	0.0	52.10993	48
TATGCCG	4990	0.0	52.038055	43
TCGTATG	5175	0.0	51.87322	40
CGTATGC	5090	0.0	51.77682	41
TCTCGTA	5145	0.0	51.767532	38
CTCGTAT	5105	0.0	51.761806	39
GCCGTCT	4950	0.0	51.75157	46
CTTGAAA	5100	0.0	51.675297	57
GTATGCC	5050	0.0	51.563187	42
ATGCCGT	5025	0.0	51.53631	44