SRR1780062_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780062_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	322105
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	30929	9.602148367768274	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3733	1.158938855342202	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	3374	1.0474845159187223	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	3170	0.9841511308424271	No Hit
CATATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	920	0.28562114838329117	No Hit
ATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTCTT	731	0.22694462985672373	RNA PCR Primer, Index 37 (95% over 22bp)
CTAATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	669	0.20769624811784976	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	529	0.16423216032039242	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCGCTA	25	2.8353406E-6	70.004196	18
GCGCTAT	25	2.8353406E-6	70.004196	19
CAGACGT	15	0.0022229187	70.00419	66
GACGTAT	15	0.0022242882	69.993324	68
AGGGGGG	3935	0.0	63.412	70
AAGCCGT	75	0.0	60.66088	44
AACTCGT	35	2.9711555E-7	59.994274	37
CCCGACT	25	2.387738E-4	56.003357	15
GCCTTTA	25	2.3895707E-4	55.99466	1
CGTCTTC	4425	0.0	55.0456	48
CCGTCTT	4390	0.0	55.006145	47
GCCGTCT	4435	0.0	54.921482	46
GTATGAC	115	0.0	54.777386	42
CGTATGC	4605	0.0	54.489918	41
TCTTCTG	4485	0.0	54.465263	50
CGTATGA	135	0.0	54.439255	41
TATGCCG	4595	0.0	54.38002	43
CTCGTAT	4705	0.0	54.373135	39
CTTGAAA	4590	0.0	54.37145	57
AAGGGGG	4570	0.0	54.371185	69