SRR1780060_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780060_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	327564
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	46193	14.101977018231551	No Hit
CTTATACACATCTGACGCTGCCGACGAAGGCTTAGGTGTAGATCTCGGTG	2327	0.7103955257598515	No Hit
ATACACATCTGACGCTGCCGACGAAGGCTTAGGTGTAGATCTCGGTGGTC	338	0.10318594228914044	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACTCG	40	1.0631993E-8	61.25628	19
GGCAATC	20	0.0069448072	52.50538	28
TTCGTCA	20	0.0069448072	52.50538	30
TGGCGAT	20	0.0069490015	52.497364	26
ACGAGTG	20	0.0069490015	52.497364	5
CGTAAGG	30	5.874667E-4	46.664326	3
TGGTCGC	415	0.0	42.16656	49
TCGCCGT	415	0.0	41.32323	52
GCCGTAT	415	0.0	41.32323	54
GTTCGCT	60	2.59015E-7	40.837517	59
ATTCCAC	35	0.0012538224	40.0041	17
GACGGCC	35	0.0012538224	40.0041	31
CACGTAC	35	0.001254764	39.997993	39
ATCTCGG	440	0.0	38.975315	42
TACTCGC	45	9.1819486E-5	38.892876	20
ACTCGCA	45	9.190212E-5	38.88694	21
CGTATCA	435	0.0	38.618755	56
TCGGTGG	435	0.0	38.618755	45
GTCGCCG	445	0.0	38.53739	51
TCTCGGT	445	0.0	38.53739	43