SRR1780060_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780060_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	327564
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	30202	9.220182926084673	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCC	4336	1.3237107862890916	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4149	1.2666227057918453	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCG	2899	0.8850178896337815	No Hit
CATATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	662	0.20209791063731056	No Hit
CTAATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	653	0.1993503559609725	No Hit
ATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGTCTT	643	0.19629751743170798	RNA PCR Primer, Index 36 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCC	580	0.17706463469734157	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTAAACAATCTCGTATGCCGT	422	0.12882978593496233	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACTT	30	1.0230542E-7	69.98962	47
GCAATCG	20	7.925989E-5	69.98962	8
AGGGGGG	3730	0.0	63.338074	70
CGACTTC	35	2.9692637E-7	60.000263	48
CGTCTTA	30	8.366558E-6	58.333584	48
AAGGGGG	4400	0.0	53.61387	69
ATCGTAT	40	7.475428E-7	52.492214	39
GCCGTAT	20	0.006951698	52.492214	46
CCGTCTT	4585	0.0	50.90848	47
GCCGACT	55	2.2810127E-9	50.90154	46
TATGCCG	4720	0.0	50.8611	43
CGTCTTC	4620	0.0	50.833553	48
CTGCTTG	4645	0.0	50.710663	54
CGTATGC	4805	0.0	50.689674	41
TCGTATG	4835	0.0	50.66467	40
GCCGTCT	4630	0.0	50.640438	46
CTTGAAA	4780	0.0	50.59646	57
CTCGTAT	4815	0.0	50.43904	39
TCTTCTG	4635	0.0	50.366993	50
GTATGCC	4785	0.0	50.316467	42