SRR1780057_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780057_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	362985
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	36656	10.09848891827486	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4460	1.2287009105059439	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	4351	1.1986721214375249	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCG	3409	0.9391572654517405	No Hit
ATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGTCTT	1085	0.2989104232957285	TruSeq Adapter, Index 25 (95% over 22bp)
CATATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	949	0.2614433103296279	No Hit
CTAATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	685	0.1887130322189622	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	644	0.17741779963359366	No Hit
CTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGTC	375	0.10331005413446837	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGAAT	15	0.002223796	69.99904	39
TGGCATA	15	0.002223796	69.99904	12
CGAATGC	40	1.3460522E-10	69.99904	41
CGACTTA	15	0.002223796	69.99904	48
AGGGGGG	4295	0.0	63.398426	70
AATCTCG	40	1.0644726E-8	61.249157	36
ATCTAGT	90	0.0	54.44369	37
AAGGGGG	5030	0.0	54.064865	69
CGTATGA	100	0.0	52.49928	41
GCGCCGT	20	0.0069486024	52.49928	33
ACGGACC	20	0.0069486024	52.49928	52
GGCATAT	20	0.0069486024	52.49928	13
CGTCTTC	4985	0.0	52.446617	48
CCGTCTT	4965	0.0	52.446407	47
GCCGTCT	5005	0.0	52.306973	46
CGTATGC	5290	0.0	52.003063	41
TATGCCG	5240	0.0	51.96493	43
TCGTATG	5340	0.0	51.909397	40
ATGCCGT	5260	0.0	51.90043	44
GTCTTCT	4950	0.0	51.827568	49