SRR1780053_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780053_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	608220
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	38802	6.37959948702772	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	4312	0.7089539969090132	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	675	0.11097957975732466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTTGCG	15	0.002224306	70.00074	18
TTATCCG	20	0.0069501805	52.500553	48
ACGTCCA	20	0.0069501805	52.500553	19
GTTGCGT	20	0.0069501805	52.500553	19
TGCGTTA	20	0.006952441	52.49624	21
CGATACC	30	5.876902E-4	46.66716	45
TGGTCGC	820	0.0	40.54921	49
GCCGTAT	790	0.0	40.316883	54
CGGTGGT	820	0.0	40.122375	46
CGTGCCG	35	0.0012557452	39.99713	9
ATTCGCA	35	0.0012557452	39.99713	39
ATCTCGG	810	0.0	39.753506	42
GATCTCG	820	0.0	39.69554	41
TCTCGGT	830	0.0	39.63897	43
TCGCCGT	805	0.0	39.565636	52
TCGGTGG	825	0.0	39.454964	45
GTCGCCG	850	0.0	38.70629	51
CGTATCA	825	0.0	38.609646	56
CTCGGTG	835	0.0	38.563282	44
AGATCTC	845	0.0	38.52112	40