SRR1780052_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780052_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	472711
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

$Per Sequence quality graph$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGT	28645	6.059727825246292	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10229	2.1639014112216555	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCC	3640	0.7700265066816723	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCG	3059	0.6471184296536362	No Hit
CATATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGT	1329	0.2811442932362479	No Hit
ATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCCGTCTT	780	0.1650056800032155	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGGGAATGAATCTCGTATGCC	513	0.10852296646365327	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGTA	15	0.0022226125	70.01174	22
CGATCGG	15	0.0022226125	70.01174	22
AGGGGGG	3740	0.0	60.451893	70
AAGCCGT	50	9.822543E-10	55.991623	44
CGAATGC	50	9.822543E-10	55.991623	41
CCGTCTT	4285	0.0	53.002575	47
TATGCCG	4400	0.0	52.651215	43
ACGCGAA	20	0.006942001	52.514366	27
CGTCTTC	4340	0.0	52.4977	48
GCCGTCA	80	0.0	52.49215	46
GCCGTCT	4350	0.0	52.451923	46
AAGGGGG	4300	0.0	52.41631	69
CGTATGC	4450	0.0	52.374184	41
GTATGCC	4445	0.0	52.118187	42
TCGTATG	4500	0.0	52.103313	40
ATGCCGT	4450	0.0	51.902344	44
CTCGTAT	4520	0.0	51.717926	39
TGCCGTC	4440	0.0	51.625156	45
CTTGAAA	4505	0.0	51.43493	57
GTCTTCT	4440	0.0	51.31532	49