SRR1780051_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780051_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	622040
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	48918	7.864124493601697	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	4666	0.7501125329560799	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	686	0.11028229695839496	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	673	0.10819239920262362	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGGAT	20	0.0069496916	52.50163	43
CGGTTCT	20	0.0069496916	52.50163	43
GACCTTC	20	0.0069496916	52.50163	43
CGCGCAA	20	0.0069519016	52.49741	15
GCCGTAT	845	0.0	45.14933	54
CGGTGGT	865	0.0	44.91108	46
TCGGTGG	870	0.0	44.65297	45
CTCGGTG	855	0.0	44.617683	44
GTCGCCG	895	0.0	44.187763	51
TCGCCGT	870	0.0	43.84841	52
TGGTCGC	895	0.0	43.796722	49
ATCTCGG	880	0.0	43.353615	42
GATCTCG	900	0.0	42.390205	41
TCTCGGT	940	0.0	40.958717	43
GGTATCA	60	2.5982627E-7	40.831318	1
AGATCTC	950	0.0	40.15914	40
GTAGATC	970	0.0	40.052788	38
CGCCGTA	945	0.0	40.00124	53
CGTATCA	955	0.0	39.948883	56
GTATCAT	975	0.0	38.770435	57