SRR1780051_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780051_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	622040
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGT	31578	5.076522410134396	Illumina PCR Primer Index 6 (95% over 21bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	8373	1.346054916082567	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCC	4086	0.6568709407755128	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCG	2917	0.4689409041219214	No Hit
CATATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGT	1302	0.20931129830879044	Illumina PCR Primer Index 6 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGTCTT	944	0.1517587293421645	Illumina PCR Primer Index 6 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCG	15	0.002223258	70.00925	23
TGCCGTA	35	2.9743387E-7	59.99828	45
AGGGGGG	4180	0.0	59.280594	70
CGAATGC	30	8.377014E-6	58.331657	41
GCCGTAT	25	2.3905207E-4	55.99839	46
CGCGATC	20	0.0069469134	52.50694	22
CGACTTT	20	0.0069513326	52.498493	61
CGTCTTA	20	0.006953543	52.494274	48
AAGGGGG	4715	0.0	52.257248	69
CCGTCTT	4750	0.0	51.65115	47
GCCGTCT	4780	0.0	51.400196	46
TATGCCG	4900	0.0	51.28424	43
CGTCTTC	4805	0.0	51.274323	48
CGTATGC	4985	0.0	50.83104	41
TCTTCTG	4815	0.0	50.80443	50
ATGCCGT	4960	0.0	50.73443	44
TCGTATG	5040	0.0	50.692986	40
CTCGTAT	5040	0.0	50.623543	39
GTCTTCT	4835	0.0	50.594276	49
TCTCGTA	5060	0.0	50.49262	38