SRR1780049_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780049_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	119187
Sequences flagged as poor quality	0
Sequence length	76
%GC	70

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	48299	40.523714834671566	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	5741	4.816800489986324	No Hit
TCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGT	675	0.5663369327191724	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	645	0.541166402376098	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	602	0.5050886422176915	No Hit
TCTTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	166	0.13927693456501128	No Hit
CTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGG	128	0.10739426279711714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCATTG	15	0.0022200001	70.0	51
AGTGATT	15	0.0022200001	70.0	17
TGTAGTA	15	0.0022200001	70.0	4
CCGAACG	15	0.0022200001	70.0	35
AGGGAGT	15	0.0022200001	70.0	33
AAAAAGG	485	0.0	56.288666	70
CCCTATC	25	2.382319E-4	55.999996	25
ATGAGAG	25	2.382319E-4	55.999996	5
CTAGACT	20	0.0069368295	52.5	4
CTCACAA	20	0.0069368295	52.5	20
ACACGAC	20	0.0069368295	52.5	28
GACAAGC	20	0.0069368295	52.5	57
GAGAGTA	20	0.0069368295	52.5	7
ATAGAAT	20	0.0069368295	52.5	29
CTTATAA	20	0.0069368295	52.5	1
GTATGCC	20	0.0069368295	52.5	8
CAAGAGC	20	0.0069368295	52.5	32
TGCTACT	20	0.0069368295	52.5	43
GGATTTG	20	0.0069368295	52.5	1
CGTCCGG	20	0.0069368295	52.5	10