SRR1780046_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780046_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	405899
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	42902	10.569624463228537	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	5024	1.2377463359111502	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	652	0.1606310929566222	No Hit
TCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGT	556	0.13697988908570852	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	482	0.11874875276854588	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATAGT	15	0.0022242835	69.99667	15
TTTAGCG	20	0.0069467323	52.503975	27
GACGGTA	20	0.0069535063	52.49104	10
GCCGTAT	790	0.0	45.18773	54
CGTATCA	785	0.0	44.589367	56
TGGTCGC	825	0.0	42.85173	49
TCGCCGT	810	0.0	42.781017	52
CGCCGTA	810	0.0	42.781017	53
TCGGTGG	845	0.0	42.25172	45
CCGTATC	845	0.0	41.83749	55
GTGGTCG	855	0.0	41.757545	48
TCTCGGT	850	0.0	41.59138	43
GTCGCCG	875	0.0	41.20312	51
CTCGGTG	865	0.0	40.870148	44
CGGTGGT	885	0.0	40.73755	46
GTATCAT	830	0.0	40.48499	57
GATCTCG	875	0.0	40.00303	41
GGTGGTC	895	0.0	39.89129	47
AGATCTC	900	0.0	39.28075	40
TAGATCT	895	0.0	39.104286	39