SRR1780046_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780046_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	405899
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGT	27150	6.68885609474278	Illumina PCR Primer Index 1 (95% over 21bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	8525	2.1002761770785345	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCG	2904	0.7154489170951395	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCC	2810	0.692290446638203	No Hit
CATATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGT	1038	0.25572864185425437	Illumina PCR Primer Index 1 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGTCTT	762	0.18773143072537748	Illumina PCR Primer Index 1 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCC	613	0.15102279138406352	No Hit
CTTATACACATCTCCGAGCCCACGAGACCCACCACGATCTCGTATGCCGT	516	0.12712522080616115	Illumina PCR Primer Index 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATCCGA	15	0.0022237406	70.000984	15
ATATCGT	85	0.0	65.87517	37
AGGGGGG	3635	0.0	61.32756	70
ATCGTAT	95	0.0	58.940933	39
ACGATAT	95	0.0	58.940933	34
CCGTCTT	4410	0.0	53.089447	47
GCCGTCT	4440	0.0	53.046013	46
CGTCTTC	4470	0.0	53.003162	48
TATGCCG	4495	0.0	52.864082	43
CGTATGC	4575	0.0	52.70463	41
ACGAATA	20	0.0069484254	52.50074	52
TCGTATG	4620	0.0	52.49427	40
ATGCCGT	4520	0.0	52.49427	44
GTATGCC	4540	0.0	52.417187	42
AAGGGGG	4250	0.0	52.123722	69
TGCCGTC	4545	0.0	52.05152	45
CTCGTAT	4555	0.0	52.01408	39
TTGAAAA	4660	0.0	51.97498	58
GTCTTCT	4580	0.0	51.806572	49
CTTGAAA	4665	0.0	51.69419	57