SRR1780045_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780045_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	289114
Sequences flagged as poor quality	0
Sequence length	76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	45932	15.887158698644827	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	6887	2.382105328693872	No Hit
CTCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGG	984	0.3403501732880455	No Hit
ATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTGGTC	787	0.272210961765947	No Hit
TCTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGT	719	0.24869082783953736	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACACGG	20	0.006946801	52.5	43
GCGTTGG	20	0.006946801	52.5	6
TTCCACG	20	0.006946801	52.5	46
CCGACGT	20	0.006946801	52.5	35
CGACTAC	20	0.006946801	52.5	1
CGTCAGA	20	0.006946801	52.5	2
CGTATCA	1205	0.0	43.568462	56
GTATCAT	1225	0.0	42.571426	57
GCCGTAT	1225	0.0	42.285713	54
CGCCGTA	1245	0.0	42.168674	53
CCGTATC	1230	0.0	42.113823	55
TCGCCGT	1240	0.0	42.05645	52
CGGTGGT	1270	0.0	41.33858	46
GGTGGTC	1275	0.0	41.17647	47
GTGGTCG	1285	0.0	41.128403	48
GGTCGCC	1275	0.0	40.901962	50
GTCGCCG	1285	0.0	40.85603	51
CATTAAA	1290	0.0	40.697674	61
TCGGTGG	1285	0.0	40.583656	45
TCATTAA	1290	0.0	40.426357	60