SRR1780045_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780045_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	289114
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	30216	10.451240687064619	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	11662	4.033702968379256	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	3631	1.255905974805786	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCG	3317	1.147298297557365	No Hit
CATATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	1245	0.43062598144676495	No Hit
ATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGTCTT	990	0.34242547922272876	TruSeq Adapter, Index 25 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	631	0.2182530074641837	No Hit
CTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGTC	348	0.12036774421162585	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAAA	15	0.0022236516	69.99654	58
TAACTCG	15	0.0022236516	69.99654	36
AGGGGGG	3595	0.0	62.208336	70
CTCGTAA	55	3.6379788E-11	57.269897	39
TCGTAAG	45	2.6951966E-8	54.441753	40
AAGGGGG	4160	0.0	53.5911	69
CGAAAAC	20	0.006943407	52.506485	21
TGCACCG	20	0.006943407	52.506485	24
GCGGTGT	20	0.006948159	52.497406	49
CGCGACA	20	0.006948159	52.497406	13
CTAACGC	20	0.006948159	52.497406	36
ACTCGTA	20	0.006948159	52.497406	38
AACTCGT	20	0.006948159	52.497406	37
TCGGTGT	20	0.006948159	52.497406	41
CCGTCTT	4315	0.0	51.179394	47
ATGCCGT	4480	0.0	51.169346	44
TATGCCG	4515	0.0	51.160267	43
TGCCGTC	4465	0.0	51.106094	45
GCCGTCT	4340	0.0	50.884583	46
CGTCTTC	4350	0.0	50.68715	48