SRR1780041_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780041_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	431364
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	41607	9.64545024619579	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	8197	1.9002512958893187	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	1225	0.2839829007520331	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	1059	0.24550031991543106	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	745	0.17270796821246095	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	15	0.002223142	70.00649	16
CGTCCAC	20	0.006946559	52.50487	31
AACGTTT	20	0.0069497447	52.498783	21
GCGAAGT	45	1.6822505E-6	46.67099	32
GCCGTAT	1350	0.0	46.14708	54
TCGCCGT	1360	0.0	45.807762	52
TGGTCGC	1395	0.0	45.662025	49
TCGGTGG	1405	0.0	45.58613	45
CTCGGTG	1395	0.0	45.411133	44
CGGTGGT	1405	0.0	45.08792	46
GTCGCCG	1400	0.0	44.99896	51
ATCTCGG	1410	0.0	44.928032	42
TCTCGGT	1435	0.0	44.389214	43
GATCTCG	1430	0.0	44.299675	41
CGCCGTA	1410	0.0	44.18337	53
AGATCTC	1435	0.0	44.145317	40
GTAGATC	1445	0.0	43.839817	38
GATCATA	40	4.590638E-5	43.74899	1
CGTATCA	1440	0.0	43.748985	56
GTATCAT	1465	0.0	43.71912	57