SRR1780039_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780039_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	609422
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	45014	7.386343125125118	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	8280	1.3586644394196468	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	1145	0.18788294482312748	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	1010	0.1657308072238941	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	989	0.16228491915290227	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTTG	15	0.0022236672	70.00583	37
AGCGCGA	20	7.9255864E-5	70.000084	6
CCGTAAC	20	0.006945935	52.50868	56
GAACACG	20	0.006945935	52.50868	31
CAGCGTA	20	0.0069504455	52.50006	1
GCAAGCG	20	0.0069504455	52.50006	3
TCGGGAA	20	0.006954958	52.491444	12
ACGAGAC	20	0.006954958	52.491444	48
GCCGTAT	1450	0.0	44.17609	54
GGTACAT	40	4.5922214E-5	43.75005	1
CGGTGGT	1500	0.0	43.39293	46
TCGCCGT	1480	0.0	43.03706	52
ATCTCGG	1525	0.0	42.918083	42
TCGGTGG	1530	0.0	42.77081	45
GATCTCG	1540	0.0	42.72732	41
GTCGCCG	1500	0.0	42.69655	51
CTCGGTG	1545	0.0	42.129055	44
CGCCGTA	1525	0.0	42.003498	53
AGATCTC	1570	0.0	41.914318	40
TGGTCGC	1555	0.0	41.86157	49