SRR1780039_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780039_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	609422
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGT	16904	2.773775807240303	Illumina PCR Primer Index 6 (95% over 21bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14254	2.338937550662759	No Hit
CATATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGT	10066	1.6517290153620972	Illumina PCR Primer Index 6 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCG	2859	0.46913304737932005	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCC	2613	0.4287669299762726	No Hit
CACTTATACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCC	972	0.15949539071448027	No Hit
CATAAACACATCTCCGAGCCCACGAGACCGGCCAATATCTCGTATGCCGT	857	0.1406250512780963	Illumina PCR Primer Index 6 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGA	100	0.0	59.500698	41
AGGGGGG	3900	0.0	58.877316	70
ACGTATG	55	3.6379788E-11	57.278095	40
CGTCTTA	50	9.822543E-10	55.991467	48
ATATACA	1630	0.0	52.616615	2
AAACGAC	20	0.006952411	52.496307	6
TATGCCG	4520	0.0	51.72627	43
GCCGTCT	4400	0.0	51.46651	46
CCGTCTT	4390	0.0	51.34457	47
CGTATGC	4590	0.0	51.242428	41
CGTCTTC	4410	0.0	51.18268	48
TGCCGTC	4525	0.0	51.12767	45
TCGTATG	4655	0.0	51.057423	40
ATGCCGT	4570	0.0	51.007164	44
GTATGCC	4600	0.0	50.902775	42
CTCGTAT	4675	0.0	50.76412	39
CTGCTTG	4350	0.0	50.601482	54
CATATAC	1655	0.0	50.34118	1
CTTCTGC	4415	0.0	50.25282	51
AAGGGGG	4545	0.0	50.209614	69