SRR1780038_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780038_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	662732
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	42496	6.412245070405534	No Hit
CTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTG	9250	1.395737643572364	No Hit
ATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGTGGTC	1197	0.180615995606067	No Hit
CTCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGG	1148	0.17322235835903502	No Hit
TCTTATACACATCTGACGCTGCCGACGATATGCAGTGTGTAGATCTCGGT	1035	0.1561717255240429	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACACGC	25	2.3907161E-4	55.998005	12
GGACGTT	20	0.006943429	52.51398	30
CGTTCGA	20	0.0069455015	52.510017	33
GGTCCGA	20	0.006951723	52.49813	1
GCCGGTA	20	0.006951723	52.49813	48
CTGGTAC	20	0.006951723	52.49813	55
ATACGCG	20	0.006951723	52.49813	4
ACCCGAG	20	0.006953798	52.49417	7
GCCGTAT	1730	0.0	45.72092	54
TCGGTGG	1745	0.0	45.3279	45
CTCGGTG	1735	0.0	45.18571	44
TCGCCGT	1735	0.0	45.1823	52
TGGTCGC	1750	0.0	44.998398	49
GTCGCCG	1760	0.0	44.739353	51
CGGTGGT	1770	0.0	44.48994	46
GATCTCG	1765	0.0	44.41768	41
CGCCGTA	1785	0.0	44.312153	53
ATCTCGG	1775	0.0	44.167442	42
TCTCGGT	1795	0.0	44.06861	43
AGATCTC	1795	0.0	43.870308	40