SRR1780033_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780033_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	334745
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	16950	5.063555841013309	No Hit
CTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	16396	4.898056729749511	No Hit
CATATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	9286	2.774051890244813	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCG	3164	0.9451970903224842	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	2783	0.8313791094713887	No Hit
CACTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	946	0.2826031755515392	No Hit
CATAAACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	812	0.24257270459603578	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	679	0.20284096849840927	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	546	0.16310923240078268	No Hit
ATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGTCTT	530	0.15832947467475245	TruSeq Adapter, Index 25 (95% over 22bp)
CAAATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	522	0.15593959581173727	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTACG	15	0.0022194781	70.03214	22
GGTAGCC	15	0.0022247466	69.99029	45
AGGGGGG	3400	0.0	60.324173	70
AACTCGT	35	2.9724106E-7	59.991676	37
TAACTCG	35	2.9724106E-7	59.991676	36
AAGCCGT	65	0.0	59.222553	44
ATATACA	1180	0.0	58.12753	2
CATATAC	1155	0.0	57.87076	1
CGTATGA	90	0.0	54.43689	41
ACGTATG	45	2.6988346E-8	54.43689	40
CACGTAT	45	2.6988346E-8	54.43689	39
TGCCGTA	65	3.6379788E-12	53.838684	45
CATGGAC	20	0.006947459	52.50056	65
TGACGCG	20	0.006951566	52.49272	39
GTAACTC	20	0.006951566	52.49272	41
GCCGTAT	60	8.367351E-11	52.492718	46
CGTCTTA	55	2.2791937E-9	50.909634	48
AGCCGTC	70	7.2759576E-12	49.993065	45
AAGGGGG	4100	0.0	49.939556	69
TCGTATG	4230	0.0	49.803967	40