SRR1780026_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780026_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	344826
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	27036	7.840476066189904	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	4442	1.2881859256552581	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	3330	0.9657044422404343	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2046	0.5933427293765552	No Hit
ATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTCTT	1336	0.3874417822321983	RNA PCR Primer, Index 37 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	864	0.25056115258130185	No Hit
ATTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	595	0.17255079373365118	No Hit
CTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	401	0.1162905349364607	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACACT	15	0.0022225752	70.00797	34
CGGTTTA	15	0.0022238542	69.997826	62
GACGAAT	15	0.0022238542	69.997826	46
AGGGGGG	3085	0.0	59.33365	70
GCAGCGT	25	2.3890492E-4	55.998264	1
CGACGCT	20	0.0069448	52.50598	26
AAGCGAC	20	0.0069448	52.50598	31
AGCGACA	20	0.0069448	52.50598	32
CAGGTAT	20	0.0069487845	52.49837	1
ACATGTC	20	0.0069487845	52.49837	64
GTCTTAA	20	0.0069487845	52.49837	49
GCCGTAA	20	0.0069487845	52.49837	46
CGTCTAC	35	2.0847918E-5	49.998447	48
ACGTATG	35	2.0847918E-5	49.998447	40
CGAATGC	80	0.0	48.123505	41
ATGACGA	30	5.8745476E-4	46.66522	44
TATACCG	45	1.6826962E-6	46.665215	6
TGCCGTA	45	1.6826962E-6	46.665215	45
GCCGTCT	4300	0.0	46.393906	46
CCGTCTT	4285	0.0	46.311275	47