SRR1780025_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780025_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	302060
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGT	21106	6.9873535059259755	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCG	3632	1.2024101171952593	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCC	2635	0.8723432430642919	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1596	0.5283718466529829	No Hit
ATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCTT	1121	0.3711183208634046	TruSeq Adapter, Index 7 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACCATCGCCCATCTCGTATGCCGT	926	0.30656161027610407	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCC	604	0.19996027279348474	No Hit
ATTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGT	475	0.15725352578957824	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCGACAATCTCGTATGCCGT	401	0.1327550817718334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGT	15	0.0022235836	69.99784	19
GATAACT	15	0.0022235836	69.99784	42
GTCGGTC	15	0.0022235836	69.99784	16
GCCGTAT	40	1.0639269E-8	61.24812	46
TGCCGTA	35	2.9692092E-7	59.998154	45
AGGGGGG	2535	0.0	59.7812	70
ATCGTAT	60	1.8189894E-12	58.331535	39
CGTATGA	135	0.0	57.035282	41
GTATGAC	130	0.0	56.536724	42
TATGACG	135	0.0	54.44277	43
CCTCGAC	20	0.006943397	52.50708	29
CGCTCGA	20	0.006943397	52.50708	32
CTCGACC	20	0.006943397	52.50708	30
CGGTATC	20	0.006943397	52.50708	25
TGACGTC	160	0.0	52.498386	45
TGACGCT	20	0.0069479453	52.498386	18
TCGGAAA	20	0.0069479453	52.498386	11
CTCGAAA	20	0.0069479453	52.498386	39
TCGGTTC	20	0.0069479453	52.498386	67
ATATCGT	60	8.367351E-11	52.498383	37