SRR1780017_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780017_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	389999
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	35841	9.190023564162985	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9841	2.5233398034353933	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	5235	1.3423111341311131	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	3710	0.9512844904730524	No Hit
ATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTCTT	1161	0.29769307100787434	TruSeq Adapter, Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	691	0.17717994148702945	No Hit
CTAATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	480	0.12307723865958632	No Hit
CTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	429	0.11000028205200527	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGTAT	15	0.0022239285	69.99897	39
GAACACG	15	0.0022239285	69.99897	18
CCGTTAG	15	0.0022239285	69.99897	38
AGGGGGG	4470	0.0	62.24741	70
ATCGGAT	35	2.9711373E-7	59.99912	32
AAGCCGT	25	2.3892443E-4	55.99918	44
AAGGGGG	5110	0.0	54.58824	69
CCGTCTT	5370	0.0	53.50946	47
TATGCCG	5405	0.0	53.486725	43
GCCGTCT	5380	0.0	53.47505	46
CGTCTTC	5405	0.0	53.292465	48
CGTATGC	5445	0.0	53.286636	41
ATGCCGT	5440	0.0	53.142605	44
TGCCGTC	5430	0.0	53.111557	45
TCGTATG	5490	0.0	52.913616	40
CTCGTAT	5440	0.0	52.692245	39
GTATGCC	5480	0.0	52.690838	42
CTGCTTG	5435	0.0	52.611923	54
CGGAACT	20	0.0069490126	52.499233	34
CGTTAGC	20	0.0069490126	52.499233	39