SRR1780011_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780011_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	294601
Sequences flagged as poor quality	0
Sequence length	76
%GC	64

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	60374	20.493481013302738	No Hit
CTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTG	8476	2.8771117545425846	No Hit
CTCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGG	1094	0.3713497238638022	No Hit
TCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGT	940	0.3190756311078374	No Hit
ATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGGTC	765	0.25967325297605914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCAGTG	25	2.3865071E-4	56.007603	32
TGTTTTA	20	0.0069432016	52.50713	32
GAACTTT	20	0.0069432016	52.50713	20
TACTGTT	20	0.0069478643	52.498215	7
ACGTATT	20	0.0069478643	52.498215	1
CGTTTAC	20	0.0069478643	52.498215	41
TAACATT	30	5.87323E-4	46.665085	58
CATTAAA	1560	0.0	45.99203	61
ATCATTA	1535	0.0	45.829063	59
TATCATT	1515	0.0	45.741024	58
GCCGTAT	1540	0.0	45.680267	54
ATTAAAA	1605	0.0	45.574776	62
CGTATCA	1545	0.0	45.30591	56
GTATCAT	1545	0.0	45.30591	57
TCATTAA	1555	0.0	45.23962	60
CGCCGTA	1585	0.0	45.045788	53
CCGTATC	1555	0.0	45.01455	55
TCTCGGT	1605	0.0	44.70253	43
TAGATCT	1585	0.0	44.604164	39
AGATCTC	1580	0.0	44.523808	40