SRR1780011_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780011_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	294601
Sequences flagged as poor quality	0
Sequence length	76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGT	42523	14.434099001700606	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14093	4.783758371492289	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCG	4627	1.5705988778042166	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCC	4480	1.5207008801735227	No Hit
ATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGTCTT	1298	0.440595924657418	RNA PCR Primer, Index 36 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCC	722	0.24507724006367937	No Hit
CTAATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGT	643	0.2182613093641909	No Hit
CTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGTC	508	0.17243661766253338	No Hit
CATATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGT	450	0.1527489723388583	No Hit
ATTATACACATCTCCGAGCCCACGAGACTAACAACAATCTCGTATGCCGT	316	0.10726372279795385	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTATA	15	0.0022225305	70.005775	2
AGGGGGG	5025	0.0	64.99043	70
TCTTTAT	90	0.0	58.348053	1
AAGGGGG	5800	0.0	56.246014	69
TCTATAG	25	2.387136E-4	56.00462	52
TCTTCTG	6160	0.0	54.379482	50
GTCTTCT	6160	0.0	54.322662	49
CCGTCTT	6115	0.0	54.198048	47
TTGAAAA	6280	0.0	54.00923	58
CTTGAAA	6235	0.0	53.949917	57
TTCTGCT	6200	0.0	53.91574	52
GCCGTCT	6195	0.0	53.72412	46
TCTGCTT	6185	0.0	53.706936	53
TGAAAAA	6440	0.0	53.645725	59
CTTCTGC	6265	0.0	53.635708	51
TCGTATG	6380	0.0	53.592503	40
CGTCTTC	6270	0.0	53.537106	48
GTATGCC	6260	0.0	53.389908	42
CGTATGC	6335	0.0	53.310265	41
CTCGTAT	6335	0.0	53.310265	39