SRR1780010_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780010_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	319638
Sequences flagged as poor quality	0
Sequence length	76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	61609	19.274616910379866	No Hit
CTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTG	6167	1.9293700999255408	No Hit
CTCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGG	820	0.2565402111138225	No Hit
TCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGT	772	0.24152322314618413	No Hit
ATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGGTC	620	0.1939694279153292	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGTGA	15	0.002224397	69.99233	21
AGGACGG	25	2.3897097E-4	55.99387	5
AGTTCCA	20	0.0069418796	52.510685	27
TCGGGTC	20	0.006950477	52.494255	45
CCATCGA	20	0.006950477	52.494255	40
CCGCGTG	20	0.006950477	52.494255	20
CAGTCGG	20	0.006950477	52.494255	16
CGGACGG	20	0.006950477	52.494255	20
ACCGCGT	30	5.8761705E-4	46.661556	19
GCCGTAT	1105	0.0	43.71246	54
CGTATCA	1120	0.0	43.43954	56
CGCCGTA	1115	0.0	43.32042	53
TCGCCGT	1125	0.0	42.93535	52
GTCGCCG	1150	0.0	42.6107	51
ATCTCGG	1155	0.0	42.419598	42
TCGGTGG	1155	0.0	42.419598	45
CCGTATC	1140	0.0	42.37041	55
TGGTCGC	1155	0.0	42.12319	49
GTATCAT	1175	0.0	42.001972	57
CTCGGTG	1150	0.0	41.9954	44