SRR1780010_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780010_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	319638
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGT	41979	13.133294539447752	Illumina PCR Primer Index 1 (95% over 21bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10563	3.3046759146284237	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCG	4032	1.2614269892816248	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCC	3967	1.2410914847421146	No Hit
ATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGTCTT	1212	0.37917894618286935	Illumina PCR Primer Index 1 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCC	889	0.2781271313173027	No Hit
CTTATACACATCTCCGAGCCCACGAGACCCACCACGATCTCGTATGCCGT	776	0.242774638810154	Illumina PCR Primer Index 1 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGTC	484	0.15142129534035378	Illumina PCR Primer Index 1 (95% over 22bp)
CTAATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGT	483	0.1511084414243613	Illumina PCR Primer Index 1 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACACAACACGATCTCGTATGCCGT	456	0.14266138569256473	TruSeq Adapter, Index 1 (95% over 23bp)
CATATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGT	411	0.1285829594729037	Illumina PCR Primer Index 1 (95% over 21bp)
ATTATACACATCTCCGAGCCCACGAGACCCAACACGATCTCGTATGCCGT	403	0.12608012814496397	Illumina PCR Primer Index 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCGA	15	0.0022210465	70.018936	29
TACGAAG	15	0.0022238053	69.99703	39
CGTCCGA	15	0.0022238053	69.99703	42
AGGGGGG	5045	0.0	62.712902	70
CGTCTAC	25	2.3889181E-4	55.997627	48
CCGTCTT	6175	0.0	53.900547	47
GCCGTCT	6210	0.0	53.822193	46
CGTCTTC	6230	0.0	53.76176	48
TATGCCG	6260	0.0	53.671844	43
CTCGTAT	6300	0.0	53.664387	39
CTTGAAA	6310	0.0	53.57934	57
TCTCGTA	6335	0.0	53.533638	38
ATGCCGT	6285	0.0	53.514038	44
TCGTATG	6360	0.0	53.488297	40
TGCCGTC	6275	0.0	53.48777	45
GTCTTCT	6265	0.0	53.461414	49
CGTATGC	6305	0.0	53.455303	41
TCTTCTG	6265	0.0	53.34969	50
ATCTCGT	6260	0.0	53.280487	37
CTTCTGC	6260	0.0	53.280487	51