SRR1780009_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780009_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	452180
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	35601	7.8731920916449205	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	12245	2.707992392410102	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	4716	1.0429474987836702	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCG	3734	0.825777345304967	No Hit
ATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGTCTT	1216	0.26891945685346547	TruSeq Adapter, Index 25 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	711	0.157238267946393	No Hit
CTAATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	514	0.11367154672917863	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACCGA	15	0.002225102	69.991486	11
AGGGGGG	4375	0.0	60.872597	70
CAGCGTT	25	2.387E-4	56.01177	1
CGTATGA	85	0.0	53.5229	41
TTGCAGA	20	0.006940513	52.51684	29
GCGTATG	20	0.006940513	52.51684	27
TGCCGTA	60	8.367351E-11	52.493614	45
ATCAAGA	20	0.006952668	52.49361	10
AAGGGGG	5090	0.0	52.046715	69
CGTCTTC	5225	0.0	51.237785	48
CCGTCTT	5245	0.0	51.10913	47
GCCGTCT	5280	0.0	51.101734	46
TATGCCG	5400	0.0	51.003056	43
TCGTATG	5475	0.0	50.879654	40
TCTTCTG	5210	0.0	50.84794	50
CTCGTAT	5485	0.0	50.786892	39
CTTCTGC	5210	0.0	50.7136	51
TCTCGTA	5535	0.0	50.644245	38
CGTATGC	5415	0.0	50.603264	41
GTCTTCT	5235	0.0	50.538265	49