SRR1780007_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780007_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348167
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	51480	14.786007864042256	No Hit
CTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTG	5715	1.6414536702214741	No Hit
CTCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGG	759	0.21799883389293068	No Hit
ATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGGTC	701	0.20134016147423506	No Hit
TCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGT	663	0.19042585885508967	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGTT	15	0.0022234353	70.0013	55
CGCATGG	20	0.0069474787	52.500973	37
CGACTAC	30	5.8690336E-4	46.674232	27
GCCGTAT	870	0.0	41.437546	54
TCGCCGT	870	0.0	41.4316	52
GTCGCCG	890	0.0	40.893757	51
ATCTCGG	890	0.0	40.506367	42
CTCGGTG	890	0.0	40.50055	44
CGTATCA	895	0.0	40.280075	56
TCGGTGG	905	0.0	40.21596	45
GATCTCG	900	0.0	40.056293	41
CGCCGTA	900	0.0	40.056293	53
CGGTGGT	900	0.0	40.050545	46
GGTACAT	35	0.0012535634	40.006485	1
TACGGCG	35	0.0012535634	40.006485	31
GCGGCGA	35	0.0012535634	40.006485	18
GTACACC	35	0.0012544494	40.00074	21
TCCGATC	35	0.0012544494	40.00074	63
TCTCGGT	910	0.0	40.00074	43
CGGCGTG	35	0.0012553359	39.994995	34