SRR1780007_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780007_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348167
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	32722	9.398363429044108	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9992	2.8698871518552878	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	4112	1.1810424307875245	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCG	3020	0.8673998397320826	No Hit
ATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGTCTT	749	0.2151266489931556	Illumina PCR Primer Index 7 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	597	0.17146943851657395	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACCGGTCATCTCGTATGCCGT	535	0.15366189213796827	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTAGTATGCCGT	390	0.11201521109122921	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGACGT	368	0.10569640431172397	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCACGTATGCCGT	365	0.10483474884179145	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGATA	15	0.0022212453	70.018684	2
GGTCCGC	15	0.0022237785	69.998566	43
AGGTCCG	15	0.0022237785	69.998566	42
ACCCGTA	15	0.002225046	69.98851	9
AGGGGGG	3880	0.0	61.97928	70
CGTCTTA	335	0.0	58.49786	48
TCGTATT	30	8.36889E-6	58.332134	40
TTAACGG	30	8.36889E-6	58.332134	35
CGCGGTA	25	2.3889562E-4	55.99885	43
CCGTCTT	4365	0.0	54.194996	47
GCCGTCT	4410	0.0	53.967144	46
TCTGCTT	3955	0.0	53.53103	53
CTGCTTG	3985	0.0	53.391483	54
TGCCGTC	4845	0.0	53.38384	45
CGTATGC	4975	0.0	53.32554	41
CGTCTTC	4110	0.0	53.30025	48
TATGCCG	5040	0.0	53.2628	43
CTCGTAT	4970	0.0	53.238342	39
TCGTATG	4990	0.0	53.23538	40
GTCTTCT	3915	0.0	53.184116	49