SRR1780004_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780004_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	148874
Sequences flagged as poor quality	0
Sequence length	76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	37100	24.920402488009998	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	10626	7.137579429584749	No Hit
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	1314	0.8826255759904349	No Hit
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	1266	0.8503835458172684	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	1108	0.744253529830595	Illumina Single End PCR Primer 1 (95% over 21bp)
TCTTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	319	0.2142751588591695	No Hit
CTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGG	218	0.14643255370313152	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCGCGT	20	7.9067526E-5	69.99866	5
TTGGCTG	15	0.0022212602	69.99865	42
TCCGACC	15	0.0022212602	69.99865	45
CGCTGTG	15	0.0022212602	69.99865	41
GGATAGA	15	0.0022212602	69.99865	31
TGTGCGC	15	0.0022212602	69.99865	3
GATGGTC	15	0.0022212602	69.99865	15
GAGCGTC	15	0.0022212602	69.99865	28
CTGGGTG	15	0.0022212602	69.99865	44
GTGCGCG	15	0.0022212602	69.99865	4
TGCACGG	15	0.0022212602	69.99865	43
TGCCGGC	30	1.01830665E-7	69.99865	19
CGCGTCT	40	1.0588337E-8	61.248825	7
GCGCGTC	35	2.958659E-7	59.99885	6
TTTACCG	25	2.3844841E-4	55.998924	17
CTGAGCG	20	0.0069407406	52.498993	26
TTCACAG	20	0.0069407406	52.498993	39
TTCGTTC	20	0.0069407406	52.498993	23
GTTAGTG	20	0.0069407406	52.498993	33
TACGGAG	20	0.0069407406	52.498993	47