SRR1780002_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780002_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	308993
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	19430	6.288168340383116	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17568	5.685565692426689	No Hit
ATTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	6454	2.0887204564504698	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	3019	0.9770447874223688	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	2791	0.9032567080807655	No Hit
ATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTCTT	830	0.26861449935759063	RNA PCR Primer, Index 37 (95% over 22bp)
ATCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	720	0.23301498739453647	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	668	0.2161861271938199	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	632	0.20453537782409312	No Hit
ATTAAACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	347	0.1123002786470891	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAT	30	1.0221993E-7	69.99612	39
GCCGACA	15	0.00222385	69.99612	46
AGGGGGG	3495	0.0	61.484425	70
GTGCTTA	25	2.3889472E-4	55.99689	15
CGTCTTA	95	0.0	55.26009	48
AATCTCG	65	3.6379788E-12	53.843166	36
GACGACG	20	0.0069398843	52.514084	26
CGGGTGG	20	0.0069443295	52.50558	20
GTACTTA	20	0.0069443295	52.50558	6
ACGAGGA	20	0.0069443295	52.50558	6
ATCCTGG	20	0.0069487765	52.497086	61
GCACGTA	20	0.0069487765	52.497086	52
GACCATC	40	7.4692434E-7	52.497086	33
ATATCGT	40	7.4692434E-7	52.497086	37
TGCCGAC	40	7.4692434E-7	52.497086	45
ATTATAC	1090	0.0	52.34502	1
AAGGGGG	4115	0.0	51.965523	69
CCGTCTT	4165	0.0	49.66111	47
GCCGTCT	4185	0.0	49.591034	46
CGTATGC	4375	0.0	49.277264	41