SRR1780001_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780001_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	176831
Sequences flagged as poor quality	0
Sequence length	76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	43515	24.60824176756338	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	10370	5.864356362854929	No Hit
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	1486	0.8403503910513428	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	1250	0.7068896290808738	Illumina Single End PCR Primer 1 (95% over 21bp)
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	1099	0.6214973618879043	No Hit
TCTTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	279	0.15777776521085105	No Hit
CTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGG	244	0.13798485559658658	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGAACG	15	0.0022217834	70.0	35
CCTAAGG	15	0.0022217834	70.0	3
CCGTATA	15	0.0022217834	70.0	55
ACCAGGG	15	0.0022217834	70.0	7
GCATAAG	20	0.0069423616	52.499996	30
TCTTCGT	20	0.0069423616	52.499996	33
GTCCTCA	20	0.0069423616	52.499996	12
TTAGACG	20	0.0069423616	52.499996	39
CCTCAGC	20	0.0069423616	52.499996	1
TGGTCGA	20	0.0069423616	52.499996	49
GGTAGCC	20	0.0069423616	52.499996	50
ACGGTGG	20	0.0069423616	52.499996	45
AAAAAGG	960	0.0	49.947914	70
TCTCGGT	1770	0.0	47.06215	43
GCCGTAT	1785	0.0	47.058823	54
TCGCCGT	1770	0.0	46.864407	52
TCGGTGG	1785	0.0	46.862747	45
CTCGGTG	1780	0.0	46.797752	44
ATCTCGG	1810	0.0	46.795578	42
GTCGCCG	1785	0.0	46.666668	51