SRR1779997_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779997_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	317919
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	19635	6.1761014598058	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17639	5.548268584136211	No Hit
ATTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	5672	1.7841022398787112	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCG	3061	0.962823863940186	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	2623	0.8250529222852361	No Hit
ATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGTCTT	876	0.2755418833098997	TruSeq Adapter, Index 25 (95% over 22bp)
CTTAAACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCCGT	612	0.1925018636822587	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	556	0.17488731406427424	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACATGATGATATCTCGTATGCC	553	0.1739436774775965	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	3390	0.0	60.80889	70
GCCGTAT	35	2.969864E-7	59.997707	46
AAGCCGT	55	3.6379788E-11	57.27054	44
ATTATAC	1065	0.0	54.889164	1
TCACGAT	20	0.0069441637	52.50625	30
CGACCCA	20	0.0069484855	52.497993	17
GTTACAC	20	0.0069484855	52.497993	60
AATCTCG	40	7.4690433E-7	52.497993	36
CTCGAAA	20	0.0069484855	52.497993	39
AAGGGGG	3925	0.0	52.431118	69
CCGTCTT	3810	0.0	52.26835	47
GCCGTCT	3835	0.0	52.201397	46
CGTCTTC	3850	0.0	52.08892	48
TATGCCG	3990	0.0	51.664692	43
CGTATGC	4060	0.0	51.549755	41
ATGCCGT	3995	0.0	51.33721	44
GTATGCC	4035	0.0	51.261982	42
TGCCGTC	3960	0.0	51.260666	45
TCGTATG	4125	0.0	51.161682	40
CTTTATA	130	0.0	51.159943	2