SRR1779995_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779995_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	420140
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	17351	4.12981387156662	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	15723	3.7423239872423477	No Hit
ATTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	5368	1.2776693483124673	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCG	2603	0.6195553862998049	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	2113	0.5029275955633836	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	545	0.1297186652068358	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	536	0.12757652211167705	No Hit
ATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGTCTT	468	0.11139144094825534	Illumina PCR Primer Index 7 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACTA	15	0.0022242786	69.99715	45
TCGAAAG	20	7.924372E-5	69.99715	40
AGGGGGG	2860	0.0	60.8192	70
CTCGAAA	25	2.3897676E-4	55.997715	39
AAGCCGT	105	0.0	53.331154	44
GACGTAT	20	0.006950103	52.497856	46
CCTCGAA	20	0.006950103	52.497856	9
TTGAGCG	20	0.006950103	52.497856	33
TGCGATA	20	0.006950103	52.497856	9
ACGTATG	80	0.0	52.497856	40
CGACTAT	20	0.006950103	52.497856	46
GACGAAT	20	0.006950103	52.497856	46
CGTCCCG	20	0.006950103	52.497856	51
TGTCGGT	20	0.006950103	52.497856	16
GCATCGA	20	0.006950103	52.497856	32
CTAGCGT	20	0.006950103	52.497856	14
GCCGTCT	2970	0.0	50.907017	46
TATGCCG	3520	0.0	50.907013	43
ATATCGT	55	2.2810127E-9	50.907013	37
CGTCTTC	2780	0.0	50.861237	48