SRR1779992_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779992_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62035
Sequences flagged as poor quality	0
Sequence length	76
%GC	81

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	36829	59.368098653985655	No Hit
CTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTG	3871	6.240025791891674	No Hit
TCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGT	422	0.6802611429031998	No Hit
CTCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	376	0.6061094543402917	No Hit
ATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGGTC	376	0.6061094543402917	No Hit
TCTTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	110	0.17731925525912792	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	83	0.13379543805916017	No Hit
CTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGG	75	0.12089949222213267	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAGGTG	15	0.0022163803	69.988716	6
GTATCAA	15	0.0022163803	69.988716	57
GTCTGGC	15	0.0022163803	69.988716	10
CAATAAA	15	0.0022163803	69.988716	61
TGTGGCG	30	1.00950274E-7	69.988716	11
CGCGTCT	15	0.0022163803	69.988716	7
CCGGCGG	15	0.0022163803	69.988716	21
GTGGCGC	25	2.8120903E-6	69.98871	12
TTGTGCG	20	7.8759884E-5	69.98871	2
TGTGCGC	25	2.8120903E-6	69.98871	3
TGGCGCT	45	3.7289283E-10	62.262398	13
GTGTGGC	35	2.9332114E-7	59.990322	10
GGCGAGG	25	2.3752681E-4	55.990967	23
AAAAAGG	390	0.0	55.63205	70
TGCCGGC	20	0.0069035413	52.533897	19
GTAGATA	20	0.006925628	52.491535	38
TGCGCGT	20	0.006925628	52.491535	5
TCTGGCG	20	0.006925628	52.491535	11
TCAATAA	20	0.006925628	52.491535	60
ATCAGCA	20	0.006925628	52.491535	9